PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G153600.1
Common NameB456_008G153600, LOC105764206
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 420aa    MW: 47139.5 Da    PI: 5.8265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G153600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19201251256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+ge
  Gorai.008G153600.1 201 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDREAFKLRGE 251
                         59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.65E-35200260No hitNo description
SuperFamilySSF541715.49E-23201259IPR016177DNA-binding domain
PROSITE profilePS5103223.103201258IPR001471AP2/ERF domain
SMARTSM003809.0E-41201264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-32201259IPR001471AP2/ERF domain
PRINTSPR003674.5E-11202213IPR001471AP2/ERF domain
PfamPF008473.1E-13202251IPR001471AP2/ERF domain
PRINTSPR003674.5E-11224240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0010200Biological Processresponse to chitin
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAAANNIGKS KTGDGDEAIK MPRDQVLEIG KDKNVDFGLE RHEWRPVFYE ASMSKRPTKK  60
IRSPEREASF QFSASLPHQS SSCSVSSDAS FQPSRLVLPY AFDASQQPMY LSQQYGNNPT  120
LLPLPQHQQH MVSFTPQQQH DGVYQPMFSG ESSLPPQQLV QYWSNVLNLS PRGSLMMMSR  180
LGQNRRQLLR SPVQPINATK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA  240
YDREAFKLRG ENARLNFPEL FVNKDKVTST APSSPVSSPQ TPHQSSKPNQ TQNLPQQEPE  300
EDQDLQSVEM ETVRPPEGDN PDSGSGMTTE GFGAEGVCGC EEMEWGAMAE AWFNAIPAGW  360
GPGSPVWDDL DTTNNLLFPS NLPFTHQNQN LLDSDLSKQH NSASSPSCPM KHFFWKDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20200258160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5323106e-73EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438166.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A0D2T1240.0A0A0D2T124_G
STRINGPOPTR_0013s13920.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-50ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]